New studies unravel mysteries of how PARP enzymes work

Create: 02/16/2017 - 17:21

 A component of an enzyme family linked to DNA repair, stress responses, and cancer also plays a role in enhancing or inhibiting major cellular activities under physiological conditions, new research shows. The UT Southwestern Medical Center research focused on PARP-1, a member of the PARP enzyme family. Short for poly (ADP-ribose) polymerase, PARP became the focus of attention in 2014 with approval of the first PARP inhibitor drug to treat advanced ovarian cancer associated with mutant BRCA DNA repair genes. The drug, Lynparza or olaparib, blocks nuclear PARP enzymes, inhibiting DNA repair even further and causing genome instability that kills the cancer cells.

In two related studies published in Molecular Cell, UT Southwestern scientists describe how PARP-1 can act at a molecular level under physiological conditions to reduce the formation of fat cell precursors and to help maintain the unique ability of embryonic stem cells to self-renew and become any of a variety of different cell types. One of the studies is published online today; the earlier study posted Jan. 19.

PARP-1’s role in these cellular processes occurs during gene transcription, when DNA is copied into messenger RNA molecules, which can then be used as a template to produce new proteins.

Researchers already knew about PARP’s role in DNA damage-related diseases like cancer, said Dr. W. Lee Kraus, senior author of both UTSW studies and Professor of Obstetrics and Gynecology, and Pharmacology at UT Southwestern. Dr. Kraus also directs the Cecil H. and Ida Green Center for Reproductive Biology Sciences and holds the Cecil H. and Ida Green Distinguished Chair in Reproductive Biology Sciences.

These findings take the field in a new direction, Dr. Kraus said.

“Our research shows that PARP-1 also plays a role in normal physiological processes and normal cellular functions. It’s an important component of the cellular machinery that senses and responds to the environment,” he said.

While studies in mouse models show PARP-1 is not essential for life, it becomes important when an organism needs to adapt to changing environmental or physiological cues, such as developmental processes or altered diet, Dr. Kraus said.

Understanding how PARP-1 works could one day help researchers find ways to target the protein to treat metabolic disorders or obesity, he said.

The two new UT Southwestern studies outline for the first time the exact molecular mechanisms of PARP-1’s roles in inhibiting the formation of fat cell precursors and in maintaining stem cells. Here are the key findings:

    * The first study identifies amino acids on C/EBPb (a key transcription factor required for fat cell formation) that are chemically modified by PARP-1’s enzymatic activity through a process called ADP-ribosylation. Modification of C/EBPb interferes with the differentiation of precursor cells into fat cells, according to the study.
    * The second study reports how PARP-1 regulates embryonic stem cell self-renewal and pluripotency (ability to become different cell types), but without using its enzymatic activity. Instead, in this case, PARP-1 functions as a structural component of chromosomes in the nucleus, creating binding sites for the critical embryonic stem cell transcription factor Sox2. This action allows transcription of genes necessary to maintain the ability of embryonic stem cells to continue self-renewing, rather than becoming a specific cell type, the research shows.

Dr. Ziying Liu, a former graduate student and current postdoctoral researcher, was lead author of the study released today. Co-first authors of the earlier study were Dr. Xin Luo, a former graduate student and current data scientist, and Keun Woo Ryu, a graduate student.

Other authors contributing to one or both studies were Dr. Dae-Seok Kim, Dr. Rebecca Gupte, and Dr. Bryan Gibson, postdoctoral researchers; Tulip Nandu, computational biologist; Dr. Yonghao Yu, Assistant Professor of Biochemistry and a Virginia Murchison Linthicum Scholar in Medical Research; and Dr. Rana Gupta, Assistant Professor of Internal Medicine. Researchers from the Perelman School of Medicine at the University of Pennsylvania also contributed.

The study was supported by funding from the National Institutes of Health’s National Institute of Diabetes and Digestive and Kidney Diseases, the Department of Defense Breast Cancer Research Program, the American Heart Association, the Welch Foundation, and the Cecil H. and Ida Green Center for Reproductive Biology Sciences.

Science news reference:

Catalytic-Independent Functions of PARP-1 Determine Sox2 Pioneer Activity at Intractable Genomic Loci. Ziying Liu, W. Lee Kraus. Molecular Cell, February 16, 2017. DOI:10.1016/j.molcel.2017.01.017

Science news source:

UT Southwestern Medical Center

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